[INFO] fetching crate coverm 0.6.1...
[INFO] checking coverm-0.6.1 against master#e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682 for beta-170-4
[INFO] extracting crate coverm 0.6.1 into /workspace/builds/worker-2-tc2/source
[INFO] validating manifest of crates.io crate coverm 0.6.1 on toolchain e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate coverm 0.6.1
[INFO] finished tweaking crates.io crate coverm 0.6.1
[INFO] tweaked toml for crates.io crate coverm 0.6.1 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate crates.io crate coverm 0.6.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e3f92d20ecfe7bced6a2546ed45f495910a6ad00eb0596f22c64779eb3d5b572
[INFO] running `Command { std: "docker" "start" "-a" "e3f92d20ecfe7bced6a2546ed45f495910a6ad00eb0596f22c64779eb3d5b572", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e3f92d20ecfe7bced6a2546ed45f495910a6ad00eb0596f22c64779eb3d5b572", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3f92d20ecfe7bced6a2546ed45f495910a6ad00eb0596f22c64779eb3d5b572", kill_on_drop: false }`
[INFO] [stdout] e3f92d20ecfe7bced6a2546ed45f495910a6ad00eb0596f22c64779eb3d5b572
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:19e73879b68f455e41552ea35293514db52ea292d993f571636dbffedb77a1ee" "/opt/rustwide/cargo-home/bin/cargo" "+e6e4f7ed1589e03bc2f6c5931c1a72e7947e8682" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dcfb55de975fc8a242a6f3d5c0a27c92c6e900e06459fbe421ab03c20cabd173
[INFO] running `Command { std: "docker" "start" "-a" "dcfb55de975fc8a242a6f3d5c0a27c92c6e900e06459fbe421ab03c20cabd173", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling serde_derive v1.0.123
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[INFO] [stderr]    Compiling miniz_oxide v0.4.3
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[INFO] [stderr]    Compiling getrandom v0.2.2
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[INFO] [stderr]     Checking itoa v0.4.7
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[INFO] [stderr]    Compiling quick-error v1.2.3
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[INFO] [stderr]    Compiling indexmap v1.6.1
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[INFO] [stderr]     Checking env_logger v0.7.1
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[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
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[INFO] [stderr]    Compiling ndarray v0.13.1
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[INFO] [stderr]     Checking idna v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]     Checking buf_redux v0.8.4
[INFO] [stderr]     Checking memmap v0.7.0
[INFO] [stderr]     Checking capnp v0.9.5
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[INFO] [stderr]     Checking array-macro v1.0.5
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[INFO] [stderr]    Compiling bio v0.32.0
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[INFO] [stderr]     Checking murmurhash3 v0.0.5
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[INFO] [stderr]     Checking partitions v0.2.4
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking url v2.2.1
[INFO] [stderr]     Checking rand v0.4.6
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[INFO] [stderr]     Checking ieee754 v0.2.6
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[INFO] [stderr]     Checking nix v0.20.0
[INFO] [stderr]     Checking version-compare v0.0.11
[INFO] [stderr]    Compiling cargo-husky v1.5.0
[INFO] [stderr]     Checking colored v1.9.3
[INFO] [stderr]     Checking environment v0.1.1
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking bzip2 v0.3.3
[INFO] [stderr]     Checking needletail v0.3.2
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking needletail v0.4.0
[INFO] [stderr]     Checking thiserror v1.0.24
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking rust-htslib v0.36.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking bincode v1.3.2
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]     Checking assert_cli v0.6.3
[INFO] [stderr]     Checking checkm v0.1.0
[INFO] [stderr]     Checking finch v0.3.0
[INFO] [stderr]     Checking bird_tool_utils v0.3.0
[INFO] [stderr]     Checking galah v0.3.0
[INFO] [stderr]     Checking coverm v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: multiple lines skipped by escaped newline
[INFO] [stdout]    --> src/cli.rs:248:100
[INFO] [stdout]     |
[INFO] [stdout] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stdout]     |  ____________________________________________________________________________________________________^
[INFO] [stdout] 249 | |
[INFO] [stdout] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stdout]     | |________^ skipping everything up to and including this point
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple lines skipped by escaped newline
[INFO] [stdout]    --> src/cli.rs:248:100
[INFO] [stdout]     |
[INFO] [stdout] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stdout]     |  ____________________________________________________________________________________________________^
[INFO] [stdout] 249 | |
[INFO] [stdout] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stdout]     | |________^ skipping everything up to and including this point
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]    --> src/genome.rs:816:25
[INFO] [stdout]     |
[INFO] [stdout] 816 |     return &target_name[(0..offset)];
[INFO] [stdout]     |                         ^         ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 816 -     return &target_name[(0..offset)];
[INFO] [stdout] 816 +     return &target_name[0..offset];
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]   --> src/genome_exclusion.rs:59:35
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stdout]    |                                   ^         ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stdout] 59 +         let genome = &contig_name[0..offset];
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]    --> src/genome.rs:816:25
[INFO] [stdout]     |
[INFO] [stdout] 816 |     return &target_name[(0..offset)];
[INFO] [stdout]     |                         ^         ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 816 -     return &target_name[(0..offset)];
[INFO] [stdout] 816 +     return &target_name[0..offset];
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]   --> src/genome_exclusion.rs:59:35
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stdout]    |                                   ^         ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stdout] 59 +         let genome = &contig_name[0..offset];
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:159:16
[INFO] [stdout]     |
[INFO] [stdout] 159 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 | |             &reference_path
[INFO] [stdout] 162 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 159 ~         panic!(
[INFO] [stdout] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 |             &reference_path
[INFO] [stdout] 162 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:164:16
[INFO] [stdout]     |
[INFO] [stdout] 164 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 | |             &reference_path
[INFO] [stdout] 167 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 164 ~         panic!(
[INFO] [stdout] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 |             &reference_path
[INFO] [stdout] 167 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:159:16
[INFO] [stdout]     |
[INFO] [stdout] 159 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 | |             &reference_path
[INFO] [stdout] 162 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 159 ~         panic!(
[INFO] [stdout] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 |             &reference_path
[INFO] [stdout] 162 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:164:16
[INFO] [stdout]     |
[INFO] [stdout] 164 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 | |             &reference_path
[INFO] [stdout] 167 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 164 ~         panic!(
[INFO] [stdout] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 |             &reference_path
[INFO] [stdout] 167 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 15.13s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "dcfb55de975fc8a242a6f3d5c0a27c92c6e900e06459fbe421ab03c20cabd173", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dcfb55de975fc8a242a6f3d5c0a27c92c6e900e06459fbe421ab03c20cabd173", kill_on_drop: false }`
[INFO] [stdout] dcfb55de975fc8a242a6f3d5c0a27c92c6e900e06459fbe421ab03c20cabd173
